FH-Prof. Mag. Dr. Alexandra Graf Research Staffalexandra.firstname.lastname@example.org T: +43 1 606 68 77-3602 F: +43 1 606 68 77-3609 Room: MUT.02 Muthgasse 11/2 1190 WienPersonal WebspaceLectures 2021/22Applied Life Sciences> Transcriptomics and Genomics ILV Bioinformatics moreTranscriptomics and Genomics ILVLector: FH-Prof.in Mag.a Dr.in Alexandra Graf, Eric Schinogl, BSc2SWS4ECTSLecture contents1) Acquire knowledge on selected bioinformatics chapters (Next Generation Sequencing, ChIP-Seq, RNA-Seq) ans 2) Application of relevant bioinformatics tools for the analysis of associated data 3) using script languages under Linux, such as Bash, awk and perl.Assessment methods40 % Hands on exercise: Hand in a short program which solved a given task 60% Lecture: Written examTeaching methods- Introductions and explanations (lecture) - Exercises using the computerLanguageGerman> Selected Chapters of Bioinformatics SE Bioinformatics moreSelected Chapters of Bioinformatics SELector: FH-Prof.in Mag.a Dr.in Alexandra Graf, DI (FH) Anton Grünberg1SWS2ECTSLecture contentsThe seminar is meant to give students an overview over the various fields of bioinformatics. Experts from different fields will be invited to talk about their experiences and projects.Assessment methodsWritten exam at the end of the course.Teaching methodsSeminar Talks and DiscussionsLanguageGerman-English> Data Analysis Laboratory LB Bioinformatics moreData Analysis Laboratory LBLector: FH-Prof.in Mag.a Dr.in Alexandra Graf, Ing. DI (FH) Dr. Harald Kühnel, MSc, Katharina Seiberl, BSc MSc, Monika Waldherr, MSc2SWS4ECTSLecture contents-) Introduction to the Oxford Nanopore sequencing technology -) Sequencing of DNA samples using MinION in the wet lab -) Development of suitable quality control -) Development of suitable analysis pipeline -) Interpretation and discussion of resultsAssessment methodsImmanent examination, protocol of the results of the practical exercises, final examTeaching methods-) Presentation -) practical exercises in the wet-lab and in-silicoLanguageGerman> Master Thesis Preparation SE Bioinformatics moreMaster Thesis Preparation SELector: FH-Prof.in Mag.a Dr.in Alexandra Graf0.5SWS1ECTSLecture contentsForm and features of the written thesis. Presentation techniques.Assessment methods-Teaching methodsTalk - discussionLanguageGerman-English> Bioinformatics ILV Molecular Biotechnology moreBioinformatics ILVLector: FH-Prof.in Mag.a Dr.in Alexandra Graf3SWS3ECTSLecture contentsIn this lecture we talk about what Bioinformatics is and why we need it today. The studients will be introduced to basic programming and can play around with simple practical examples. We will go through specific topics of Bioinformatics and discuss the available applications. The topics include: - Why did Bioinformatics develop and what is it. - Human Genome Project and its consequences - Biological sequences, sequence comparison and database search. - Pattern search - Structure of biological sequences and structure prediction - High throughput technologies and data analysis Programming: - practical examples in R and a short introduction in PythonAssessment methodsExercises to be handed in using the Moodle Platform, and short mulitple choice tests also on the Moodle platform.Teaching methodslecture, powerpoint presentation, discussion and hands on exercisesLanguageGerman-English> Biotechnological Seminar SE Bioinformatics moreBiotechnological Seminar SELector: Ing. Michael Geissler, MSc., FH-Prof.in Mag.a Dr.in Alexandra Graf, FH-Prof. DI Dr. Michael Maurer, Katharina Seiberl, BSc MSc0.5SWS1ECTSLecture contentsAs an example from biotechnology, students will work in the brew lab to create a beer, following a recipe. Students will be introduced into the topic of brewing and will have the chance to see an automated solution and investigate the data produced by the equipment. Additionally to the work in the lab, students are required to design a label for their beer and create a website with the recipes they worked on. The students will work in groups of 3-4 persons.Assessment methodsStudents will be graded on their performance in the lab and the design of the label and web page.Teaching methodsPresentation, praktical lab exerciseLanguageGerman> Metagenom Analysis ILV Bioinformatics moreMetagenom Analysis ILVLector: FH-Prof.in Mag.a Dr.in Alexandra Graf1SWS2ECTSLecture contentsIntroduction to the production and analysis of metagenome/microbiome data.Assessment methodsPresentation of a practical task.Teaching methodsVortrag, Diskussion und praktisches Beispiel.LanguageGerman-English> Master Thesis Supervision AP Bioinformatics moreMaster Thesis Supervision APLector: FH-Prof.in Mag.a Dr.in Alexandra Graf0SWS1ECTSLecture contentsMethodology for the implementation of the diploma thesis: clarification of the procedure through individual presentations of the thesisAssessment methodsAssessment of the presentationTeaching methodsPresentationsLanguageGerman> Master Thesis Seminar SE Bioinformatics moreMaster Thesis Seminar SELector: FH-Prof.in Mag.a Dr.in Alexandra Graf1SWS1ECTSLecture contentsIn the course each student presents his/her Master thesis. Progression of the thesis and potential setbacks and problems will be discussed in the group.Assessment methodsPresentationTeaching methodsPresentation, discussionLanguageGerman> Transcriptomics and Genomics Practice UE Bioinformatics moreTranscriptomics and Genomics Practice UELector: FH-Prof.in Mag.a Dr.in Alexandra Graf, Eric Schinogl, BSc1.5SWS3ECTSLecture contentsThe exercise should give students the option of working with software and programs introduced in the lecture Transcriptomics and Genomics.Assessment methodsPractical examplesTeaching methodsMoodle, Linux server, example scriptsLanguageGermanPublications The publications of Alexandra Graf written at FH Campus Wien can be found in our publication database, others in the personal web space.